other:Article Title: Semaglutide drives weight loss through cAMP-dependent mechanisms in GLP1R-expressing hindbrain neurons
Article Snippet: The following viruses were used for this study: AAV1-hSyn-Cre-P2A-dTomato (Addgene; Cat # 107738), AAV2-hSyn-mCherry (Addgene; Cat # 114472), AAV1-CAG-Flex-jGCaMP7s-WPRE (Addgene; Cat # 104495), AAV2/1-hSyn-DIO-GreenDownwardcADDis (Children’s Vector Core), AAV2/1-ef1a-DIO-mKate2-PDE4D3-Cat (Addgene; Cat # 169128), and AAVdj-CMV-DIO-eGFP-2A-TeNT (Wu Tsai Neurosciences Institute; Cat # GVVC-AA-71).
Injection:Article Title: Intrinsic interval timing, not temporal prediction, underlies ramping dynamics in visual and parietal cortex
Article Snippet: A circular craniotomy in 3mm diameter using a biopsy punch (Fischer Scientific) was made over the left PPC (Najafi et al.) (stereotaxic coordinates: 2mm posterior to bregma, 1.7mm lateral) or the left V1 (Georgia Bastos et al.) (stereotaxic coordinates: 2.92mm posterior to bregma, 2.0mm lateral). .. Injection pipettes (15-20 um in diameter; Drummond Micropipettes 3.5”) were back-filled with mineral oil (Sigma Aldrich) and then front-filled with viral vectors: AAV9-Syn-jGCaMP8f (Addgene #162376) for VIP-tdTomato mice, and AAV1-CAG-flex-jGCaMP8f (Addgene #162382) for SST-cre mice. ..
Virus:Article Title: Subtype-specific modulation of inhibitory interneurons by general anesthetics
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-NeuN Abcam Cat# ab177487; RRID: AB_2532109 Rabbit polyclonal anti-GABA Sigma-Aldrich Cat#A2052; RRID: AB_477652 Alexa Fluor TM 647 goat anti-rabbit IgG Thermo Fisher Scientific Cat#A-21244; RRID: AB_2535812 Bacterial and virus strains AAV1-CaMKII-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100834; AAV1 AAV1-mDlx-GCaMP6f-Fischell-2 Addgene Addgene plasmid #83899; AAV1-CAG-flex-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100835; Chemicals, peptides, and recombinant proteins Isoflurane Viatris Healthcare 901036504 Ketamine Daiichi Sankyo N01AX03 Xylazine Bayer N/A Propofol Fresenius Kabi Japan N/A Normal saline Otsuka N/A VectaShield with DAPI Vector Labs Cat#H-1200; RRID: AB_2336790 Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#000664; RRID: IMSR_JAX:000664 Mouse: Pvalb Cre Tanahira et al. 35 N/A Mouse: Sst-IRES-Cre The Jackson Laboratory Strain#013044; RRID: IMSR_JAX:013044 Software and algorithms CaImAn Giovannucci et al., 2018 http://github.com/simonsfoundation/CaImAn MATLAB_R2022a Mathworks RRID: SCR_001622 Custom code (MATLAB) to analyze data Okada et al. 36 N/A EEG/EMG data collection system Unique Medical UAS-308S SleepSign Kissei Comtech RRID: SCR_018200 ImageJ National Institutes of Health (NIH) RRID: SCR_003070 GraphPad Prism 10 GraphPad Software. .. Inc. RRID:SCR_002798 Adobe Illustrator Adobe Systems RRID: SCR_010279 Other SomnoSuite Low-Flow Anesthesia System Kent Scientific https://www.kentscientific.com/products/ somnosuite/ EEG/EMG amplifier Unique Medical EBA-100 Stereotaxic device Narishige SR-5M-HT Stereotaxic micromanipulator Narishige SM-15R, SM15M-2 Micropipette puller Narishige PC-100 Glass Capillary, 1 mm diameter Narishige GDC-1 Microinjector BEX BJ-120, BT-200 Coverslip Glass, 2- and 4.5- mm diameter Matsunami Glass N/A Multiphoton microscope Nikon A1R MP system Nikon 25× water immersion objective (1.10 NA) Nikon N/A Ti:sapphire laser Chamereon, Coherent https://www.coherent.com/lasers/oscillators/ chameleon-ultra Fluorescence microscope Keyence BZ-X700 All-in-one Fluorescence IR camera SriHome N/A e1 iScience 29, 115140, March 20, 2026
Plasmid Preparation:Article Title: Subtype-specific modulation of inhibitory interneurons by general anesthetics
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-NeuN Abcam Cat# ab177487; RRID: AB_2532109 Rabbit polyclonal anti-GABA Sigma-Aldrich Cat#A2052; RRID: AB_477652 Alexa Fluor TM 647 goat anti-rabbit IgG Thermo Fisher Scientific Cat#A-21244; RRID: AB_2535812 Bacterial and virus strains AAV1-CaMKII-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100834; AAV1 AAV1-mDlx-GCaMP6f-Fischell-2 Addgene Addgene plasmid #83899; AAV1-CAG-flex-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100835; Chemicals, peptides, and recombinant proteins Isoflurane Viatris Healthcare 901036504 Ketamine Daiichi Sankyo N01AX03 Xylazine Bayer N/A Propofol Fresenius Kabi Japan N/A Normal saline Otsuka N/A VectaShield with DAPI Vector Labs Cat#H-1200; RRID: AB_2336790 Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#000664; RRID: IMSR_JAX:000664 Mouse: Pvalb Cre Tanahira et al. 35 N/A Mouse: Sst-IRES-Cre The Jackson Laboratory Strain#013044; RRID: IMSR_JAX:013044 Software and algorithms CaImAn Giovannucci et al., 2018 http://github.com/simonsfoundation/CaImAn MATLAB_R2022a Mathworks RRID: SCR_001622 Custom code (MATLAB) to analyze data Okada et al. 36 N/A EEG/EMG data collection system Unique Medical UAS-308S SleepSign Kissei Comtech RRID: SCR_018200 ImageJ National Institutes of Health (NIH) RRID: SCR_003070 GraphPad Prism 10 GraphPad Software. .. Inc. RRID:SCR_002798 Adobe Illustrator Adobe Systems RRID: SCR_010279 Other SomnoSuite Low-Flow Anesthesia System Kent Scientific https://www.kentscientific.com/products/ somnosuite/ EEG/EMG amplifier Unique Medical EBA-100 Stereotaxic device Narishige SR-5M-HT Stereotaxic micromanipulator Narishige SM-15R, SM15M-2 Micropipette puller Narishige PC-100 Glass Capillary, 1 mm diameter Narishige GDC-1 Microinjector BEX BJ-120, BT-200 Coverslip Glass, 2- and 4.5- mm diameter Matsunami Glass N/A Multiphoton microscope Nikon A1R MP system Nikon 25× water immersion objective (1.10 NA) Nikon N/A Ti:sapphire laser Chamereon, Coherent https://www.coherent.com/lasers/oscillators/ chameleon-ultra Fluorescence microscope Keyence BZ-X700 All-in-one Fluorescence IR camera SriHome N/A e1 iScience 29, 115140, March 20, 2026
Recombinant:Article Title: Subtype-specific modulation of inhibitory interneurons by general anesthetics
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-NeuN Abcam Cat# ab177487; RRID: AB_2532109 Rabbit polyclonal anti-GABA Sigma-Aldrich Cat#A2052; RRID: AB_477652 Alexa Fluor TM 647 goat anti-rabbit IgG Thermo Fisher Scientific Cat#A-21244; RRID: AB_2535812 Bacterial and virus strains AAV1-CaMKII-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100834; AAV1 AAV1-mDlx-GCaMP6f-Fischell-2 Addgene Addgene plasmid #83899; AAV1-CAG-flex-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100835; Chemicals, peptides, and recombinant proteins Isoflurane Viatris Healthcare 901036504 Ketamine Daiichi Sankyo N01AX03 Xylazine Bayer N/A Propofol Fresenius Kabi Japan N/A Normal saline Otsuka N/A VectaShield with DAPI Vector Labs Cat#H-1200; RRID: AB_2336790 Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#000664; RRID: IMSR_JAX:000664 Mouse: Pvalb Cre Tanahira et al. 35 N/A Mouse: Sst-IRES-Cre The Jackson Laboratory Strain#013044; RRID: IMSR_JAX:013044 Software and algorithms CaImAn Giovannucci et al., 2018 http://github.com/simonsfoundation/CaImAn MATLAB_R2022a Mathworks RRID: SCR_001622 Custom code (MATLAB) to analyze data Okada et al. 36 N/A EEG/EMG data collection system Unique Medical UAS-308S SleepSign Kissei Comtech RRID: SCR_018200 ImageJ National Institutes of Health (NIH) RRID: SCR_003070 GraphPad Prism 10 GraphPad Software. .. Inc. RRID:SCR_002798 Adobe Illustrator Adobe Systems RRID: SCR_010279 Other SomnoSuite Low-Flow Anesthesia System Kent Scientific https://www.kentscientific.com/products/ somnosuite/ EEG/EMG amplifier Unique Medical EBA-100 Stereotaxic device Narishige SR-5M-HT Stereotaxic micromanipulator Narishige SM-15R, SM15M-2 Micropipette puller Narishige PC-100 Glass Capillary, 1 mm diameter Narishige GDC-1 Microinjector BEX BJ-120, BT-200 Coverslip Glass, 2- and 4.5- mm diameter Matsunami Glass N/A Multiphoton microscope Nikon A1R MP system Nikon 25× water immersion objective (1.10 NA) Nikon N/A Ti:sapphire laser Chamereon, Coherent https://www.coherent.com/lasers/oscillators/ chameleon-ultra Fluorescence microscope Keyence BZ-X700 All-in-one Fluorescence IR camera SriHome N/A e1 iScience 29, 115140, March 20, 2026
Saline:Article Title: Subtype-specific modulation of inhibitory interneurons by general anesthetics
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-NeuN Abcam Cat# ab177487; RRID: AB_2532109 Rabbit polyclonal anti-GABA Sigma-Aldrich Cat#A2052; RRID: AB_477652 Alexa Fluor TM 647 goat anti-rabbit IgG Thermo Fisher Scientific Cat#A-21244; RRID: AB_2535812 Bacterial and virus strains AAV1-CaMKII-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100834; AAV1 AAV1-mDlx-GCaMP6f-Fischell-2 Addgene Addgene plasmid #83899; AAV1-CAG-flex-GCaMP6f-WPRE-SV40 Addgene Addgene plasmid #100835; Chemicals, peptides, and recombinant proteins Isoflurane Viatris Healthcare 901036504 Ketamine Daiichi Sankyo N01AX03 Xylazine Bayer N/A Propofol Fresenius Kabi Japan N/A Normal saline Otsuka N/A VectaShield with DAPI Vector Labs Cat#H-1200; RRID: AB_2336790 Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#000664; RRID: IMSR_JAX:000664 Mouse: Pvalb Cre Tanahira et al. 35 N/A Mouse: Sst-IRES-Cre The Jackson Laboratory Strain#013044; RRID: IMSR_JAX:013044 Software and algorithms CaImAn Giovannucci et al., 2018 http://github.com/simonsfoundation/CaImAn MATLAB_R2022a Mathworks RRID: SCR_001622 Custom code (MATLAB) to analyze data Okada et al. 36 N/A EEG/EMG data collection system Unique Medical UAS-308S SleepSign Kissei Comtech RRID: SCR_018200 ImageJ National Institutes of Health (NIH) RRID: SCR_003070 GraphPad Prism 10 GraphPad Software. .. Inc. RRID:SCR_002798 Adobe Illustrator Adobe Systems RRID: SCR_010279 Other SomnoSuite Low-Flow Anesthesia System Kent Scientific https://www.kentscientific.com/products/ somnosuite/ EEG/EMG amplifier Unique Medical EBA-100 Stereotaxic device Narishige SR-5M-HT Stereotaxic micromanipulator Narishige SM-15R, SM15M-2 Micropipette puller Narishige PC-100 Glass Capillary, 1 mm diameter Narishige GDC-1 Microinjector BEX BJ-120, BT-200 Coverslip Glass, 2- and 4.5- mm diameter Matsunami Glass N/A Multiphoton microscope Nikon A1R MP system Nikon 25× water immersion objective (1.10 NA) Nikon N/A Ti:sapphire laser Chamereon, Coherent https://www.coherent.com/lasers/oscillators/ chameleon-ultra Fluorescence microscope Keyence BZ-X700 All-in-one Fluorescence IR camera SriHome N/A e1 iScience 29, 115140, March 20, 2026
Expressing:Article Title: Subtype-specific modulation of inhibitory interneurons by general anesthetics
Article Snippet: For GABAergic interneurons, AAV1-mDlx-GCaMP6f-Fischell-2 (Addgene; 7.0 × 10 12 vg/mL, diluted 1:1 in PBS, #83899) was used. .. In Cre-driver lines, Cre-dependent expression of GCaMP6f was induced using AAV1-CAG-Flex-GCaMP6f (Addgene; 7.0 × 10 12 vg/mL, diluted 1:1 in PBS, #100835). ..
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